Variant report

Variant	rs2349604
Chromosome Location	chr11:25965678-25965679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10834857	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029028	0.92[EUR][1000 genomes]
rs11029030	0.84[ASN][1000 genomes]
rs11029033	0.87[EUR][1000 genomes]
rs11029036	0.86[ASN][1000 genomes]
rs11029041	0.87[EUR][1000 genomes]
rs12146622	0.88[EUR][1000 genomes]
rs12282385	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365738	0.87[EUR][1000 genomes]
rs17242872	0.87[EUR][1000 genomes]
rs1963451	0.80[ASN][1000 genomes]
rs7125571	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126082	0.87[EUR][1000 genomes]
rs72875052	0.87[EUR][1000 genomes]
rs7931950	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832091	chr11:25823826-26009887	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv469948	chr11:25859783-26026233	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv897140	chr11:25905509-25991194	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv467776	chr11:25951319-25979162	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	nsv553897	chr11:25951319-25979162	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases
9	nsv467777	chr11:25959082-25985507	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
10	nsv553898	chr11:25959082-25985507	Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
11	esv3348528	chr11:25964425-25982438	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25961000-25968000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr11:25961000-25972800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:25961200-25968200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:25961600-25972800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:25963200-25979200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:25965200-25966000	Active TSS	Rectal Mucosa Donor 31	rectum
7	chr11:25965400-25965800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:25965400-25966000	Active TSS	Colonic Mucosa	Colon
9	chr11:25965400-25966000	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr11:25965600-25966000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links