Variant report

Variant	rs2349968
Chromosome Location	chr12:29257996-29257997
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:29255547..29258096-chr12:29276125..29278955,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10843322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11050053	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12299859	1.00[AMR][1000 genomes]
rs12302586	1.00[AMR][1000 genomes]
rs12308583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12321950	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1466759	1.00[AMR][1000 genomes]
rs1826802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2060566	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61083639	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7962268	1.00[AMR][1000 genomes]
rs7963958	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532233	chr12:29009388-29496179	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2758301	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759888	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29256800-29259200	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr12:29256800-29259600	Enhancers	Primary hematopoietic stem cells	blood
3	chr12:29257000-29258400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr12:29257000-29258400	Enhancers	Fetal Thymus	thymus
5	chr12:29257000-29258600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr12:29257000-29259800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr12:29257200-29258000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr12:29257200-29258400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr12:29257200-29258800	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr12:29257200-29259000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr12:29257400-29258400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr12:29257400-29258800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr12:29257400-29258800	Enhancers	Dnd41	blood
14	chr12:29257600-29258000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr12:29257600-29258200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr12:29257600-29258600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr12:29257600-29258800	Enhancers	Primary T cells from cord blood	blood
18	chr12:29257800-29258000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
19	chr12:29257800-29258000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
20	chr12:29257800-29258000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr12:29257800-29258800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr12:29257800-29259800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links