Variant report

Variant	rs2350088
Chromosome Location	chr6:73542251-73542252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12215753	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4707999	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4708000	0.86[ASN][1000 genomes]
rs9342976	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73509200-73572200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73538000-73542600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:73538200-73542600	Weak transcription	NHDF-Ad	bronchial
4	chr6:73541600-73542400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:73541600-73542400	Enhancers	Osteobl	bone
6	chr6:73541600-73542800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:73541600-73543000	Enhancers	Psoas Muscle	Psoas
8	chr6:73541600-73543000	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr6:73541600-73544600	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr6:73541600-73545800	Enhancers	Fetal Heart	heart
11	chr6:73541800-73542600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:73542000-73542400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:73542200-73542800	Enhancers	HSMM	muscle
14	chr6:73542200-73542800	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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