Variant report

Variant	rs2350934
Chromosome Location	chr11:27018019-27018020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10835089	0.85[ASN][1000 genomes]
rs11029763	0.85[ASN][1000 genomes]
rs11029765	0.91[ASN][1000 genomes]
rs11029769	0.83[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs12287195	0.84[ASN][1000 genomes]
rs12419641	0.90[ASN][1000 genomes]
rs12576904	0.85[ASN][1000 genomes]
rs1445327	0.90[ASN][1000 genomes]
rs7108314	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs72874740	0.82[EUR][1000 genomes]
rs7892	0.83[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs7928331	0.84[ASN][1000 genomes]
rs7940358	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv897146	chr11:26913936-27019331	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv949332	chr11:26935972-27223492	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv897147	chr11:26983363-27258899	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1040964	chr11:26998213-27223388	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv540975	chr11:26998213-27223388	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv949575	chr11:27005687-27233359	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv533052	chr11:27006061-27225374	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv553912	chr11:27014032-27240951	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:27014600-27020000	Active TSS	Aorta	Aorta
2	chr11:27015000-27019000	Active TSS	Stomach Smooth Muscle	stomach
3	chr11:27015200-27018400	Active TSS	Right Atrium	heart
4	chr11:27015200-27019000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:27015200-27019200	Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr11:27015400-27018200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:27015400-27018200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:27015400-27018200	Active TSS	Colon Smooth Muscle	Colon
9	chr11:27015400-27018400	Active TSS	Ovary	ovary
10	chr11:27015400-27018400	Active TSS	Rectal Smooth Muscle	rectum
11	chr11:27015600-27019000	Active TSS	NHDF-Ad	bronchial
12	chr11:27016000-27019000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:27016400-27018200	Active TSS	Fetal Stomach	stomach
14	chr11:27016400-27019000	Active TSS	Fetal Muscle Leg	muscle
15	chr11:27016800-27018200	Active TSS	Fetal Muscle Trunk	muscle
16	chr11:27017200-27018400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:27017200-27018600	Active TSS	Fetal Intestine Large	intestine
18	chr11:27017400-27018400	Active TSS	Fetal Intestine Small	intestine
19	chr11:27017400-27019000	Bivalent Enhancer	Fetal Lung	lung
20	chr11:27017800-27018200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:27017800-27022600	Weak transcription	Osteobl	bone
22	chr11:27018000-27018400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:27018000-27018400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr11:27018000-27018800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:27018000-27020200	Weak transcription	Psoas Muscle	Psoas

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