Variant report

Variant	rs2351032
Chromosome Location	chr1:77888823-77888824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:77884906..77887618-chr1:77887940..77890792,2	K562	blood:

Variant related genes	Relation type
ENSG00000251767	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12022440	0.88[ASN][1000 genomes]
rs12030606	0.88[ASN][1000 genomes]
rs12753538	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005183	chr1:77728990-77949309	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv535010	chr1:77728990-77949309	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv932557	chr1:77730247-77958687	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1003714	chr1:77756861-77949309	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv470719	chr1:77774413-78269207	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv546591	chr1:77774413-78269207	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	esv1848735	chr1:77885282-77918347	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77872200-77893400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:77872200-77913800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:77882600-77889000	Weak transcription	NHLF	lung
4	chr1:77883000-77889800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:77884000-77889400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:77884400-77890400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr1:77884600-77889600	Weak transcription	Osteobl	bone
8	chr1:77884800-77889400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr1:77884800-77890600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr1:77885400-77890600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr1:77887200-77890200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:77887600-77890000	Weak transcription	Aorta	Aorta
13	chr1:77888000-77889000	Weak transcription	HSMMtube	muscle
14	chr1:77888000-77889000	Weak transcription	NHDF-Ad	bronchial
15	chr1:77888000-77889600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr1:77888000-77889600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:77888000-77893600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:77888000-77897000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr1:77888200-77889000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr1:77888200-77889000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr1:77888200-77893400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr1:77888400-77889000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:77888400-77889200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr1:77888400-77889600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:77888400-77889800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr1:77888400-77890000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr1:77888400-77890000	Weak transcription	Brain Substantia Nigra	brain
28	chr1:77888400-77891600	Weak transcription	Brain Anterior Caudate	brain
29	chr1:77888400-77892000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr1:77888400-77893600	Weak transcription	Brain Angular Gyrus	brain
31	chr1:77888600-77889000	Weak transcription	Primary T cells from cord blood	blood
32	chr1:77888600-77889000	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr1:77888600-77889400	Weak transcription	HSMM	muscle
34	chr1:77888600-77889600	Weak transcription	Brain Hippocampus Middle	brain
35	chr1:77888800-77892000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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