Variant report

Variant	rs2351242
Chromosome Location	chr13:91518875-91518876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:91512444..91516276-chr13:91517137..91519909,3	MCF-7	breast:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1041691	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10507986	0.91[EUR][1000 genomes]
rs12184671	0.83[EUR][1000 genomes]
rs12866129	0.96[EUR][1000 genomes]
rs1335553	0.96[EUR][1000 genomes]
rs1335560	0.96[EUR][1000 genomes]
rs1335564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1335575	0.96[EUR][1000 genomes]
rs1335576	0.96[EUR][1000 genomes]
rs1376746	0.96[EUR][1000 genomes]
rs1376747	0.96[EUR][1000 genomes]
rs1572315	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17666621	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17667080	0.96[EUR][1000 genomes]
rs2065757	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28600361	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2860120	0.96[EUR][1000 genomes]
rs28768763	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28864791	0.84[EUR][1000 genomes]
rs34383868	0.83[EUR][1000 genomes]
rs34636886	0.83[EUR][1000 genomes]
rs34874149	0.83[EUR][1000 genomes]
rs35044404	0.83[EUR][1000 genomes]
rs35868255	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3959920	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4274296	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4526884	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4553468	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4771825	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4773602	0.96[EUR][1000 genomes]
rs4773603	0.96[EUR][1000 genomes]
rs55962639	0.83[EUR][1000 genomes]
rs58239134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61968264	0.96[EUR][1000 genomes]
rs61968265	0.96[EUR][1000 genomes]
rs67008524	0.83[EUR][1000 genomes]
rs717457	0.83[EUR][1000 genomes]
rs723346	0.83[EUR][1000 genomes]
rs7350640	0.97[EUR][1000 genomes]
rs747222	0.83[EUR][1000 genomes]
rs928647	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs933085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9515837	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9515838	0.90[EUR][1000 genomes]
rs9515841	0.96[EUR][1000 genomes]
rs9515842	0.96[EUR][1000 genomes]
rs9515849	0.83[EUR][1000 genomes]
rs9515850	0.83[EUR][1000 genomes]
rs9515851	0.83[EUR][1000 genomes]
rs9523121	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9523134	0.83[AMR][1000 genomes]
rs9523137	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9523143	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9523146	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9523150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523151	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523152	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523158	0.97[EUR][1000 genomes]
rs9523169	0.96[EUR][1000 genomes]
rs9523170	0.96[EUR][1000 genomes]
rs9523171	0.96[EUR][1000 genomes]
rs9523172	0.96[EUR][1000 genomes]
rs9523173	0.96[EUR][1000 genomes]
rs9523177	0.96[EUR][1000 genomes]
rs9523180	0.83[EUR][1000 genomes]
rs9523181	0.83[EUR][1000 genomes]
rs9523182	0.83[EUR][1000 genomes]
rs9523183	0.83[EUR][1000 genomes]
rs9523188	0.83[EUR][1000 genomes]
rs9523190	0.83[EUR][1000 genomes]
rs9523193	0.83[EUR][1000 genomes]
rs9523195	0.83[EUR][1000 genomes]
rs977991	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948709	chr13:90753085-91745571	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1043569	chr13:91016376-91554546	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv932206	chr13:91370888-91878374	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv1794380	chr13:91511967-91550954	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	esv1818560	chr13:91511967-91550954	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	esv1823322	chr13:91511967-91550954	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
7	esv1849650	chr13:91511967-91550954	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:91514000-91524600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:91518000-91519800	Weak transcription	Fetal Kidney	kidney
3	chr13:91518400-91519600	Enhancers	Fetal Intestine Large	intestine
4	chr13:91518400-91520000	Enhancers	Stomach Mucosa	stomach
5	chr13:91518400-91520200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:91518400-91520200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr13:91518600-91520200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr13:91518800-91519000	Enhancers	Duodenum Mucosa	Duodenum
9	chr13:91518800-91519400	Flanking Active TSS	HepG2	liver
10	chr13:91518800-91519600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr13:91518800-91519600	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links