Variant report

Variant	rs2356400
Chromosome Location	chr19:44321776-44321777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2195981	0.82[JPT][hapmap]
rs2356437	0.81[CHD][hapmap]
rs7254659	0.89[JPT][hapmap]
rs9304636	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532821	chr19:43842383-44357315	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs2356400	ZNF155	cis	lymphoblastoid	seeQTL
rs2356400	ZNF880	cis	cerebellum	SCAN
rs2356400	ZNF613	cis	parietal	SCAN
rs2356400	SIGLEC14	cis	parietal	SCAN
rs2356400	CLEC11A	cis	cerebellum	SCAN
rs2356400	APOC4	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44319400-44324200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr19:44319800-44322200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr19:44319800-44322200	Weak transcription	NHEK	skin
4	chr19:44321600-44321800	Enhancers	HSMMtube	muscle
5	chr19:44321600-44323800	Weak transcription	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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