Variant report

Variant	rs2357753
Chromosome Location	chr7:13841531-13841532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10226447	0.92[EUR][1000 genomes]
rs10234269	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10256467	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10269432	0.92[EUR][1000 genomes]
rs10269779	0.92[EUR][1000 genomes]
rs10277842	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10486070	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12699555	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12699556	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12699557	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12699558	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12699559	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12699560	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2024027	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051928	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2051929	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051930	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158802	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957915	0.89[ASN][1000 genomes]
rs766514	0.92[EUR][1000 genomes]
rs766515	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7783712	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7786249	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7790528	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7793540	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7807547	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9655108	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830909	chr7:13692329-13868294	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1019873	chr7:13707148-14133367	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv433032	chr7:13792450-13911001	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv887696	chr7:13801825-13857235	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv525915	chr7:13819302-13841798	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv519601	chr7:13819968-13857235	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv464388	chr7:13828099-13868913	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv606276	chr7:13828099-13868913	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1020310	chr7:13839681-14015794	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv538738	chr7:13839681-14015794	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13837600-13845000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:13839600-13841600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr7:13840000-13841600	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr7:13840200-13841600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:13840200-13841600	Enhancers	NH-A	brain
6	chr7:13840200-13843000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:13840400-13841600	Enhancers	NHDF-Ad	bronchial
8	chr7:13840400-13841800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr7:13840600-13841600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr7:13840600-13843400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr7:13840600-13844200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr7:13840800-13843000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr7:13841000-13842800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:13841000-13845000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:13841200-13841800	Enhancers	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links