Variant report

Variant	rs235787
Chromosome Location	chr13:53359343-53359344
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs465385	1.00[AFR][1000 genomes]
rs7329300	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv561650	chr13:53357729-53363039	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv3518185	chr13:53357793-53363410	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3518196	chr13:53357793-53363410	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	esv14033	chr13:53357904-53363179	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv561651	chr13:53357923-53360911	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
8	nsv561652	chr13:53357923-53362235	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
9	nsv517434	chr13:53357923-53362695	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv561653	chr13:53357923-53362695	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv561654	chr13:53357923-53363039	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv561655	chr13:53357923-53366885	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv561656	chr13:53358100-53362695	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv561657	chr13:53358598-53361295	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
15	nsv561658	chr13:53358598-53363039	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv561659	chr13:53358598-53367433	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
17	nsv561660	chr13:53358930-53363039	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53353800-53361000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:53356400-53361000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr13:53356800-53359400	Weak transcription	Brain Anterior Caudate	brain
4	chr13:53357200-53361200	Weak transcription	Brain Angular Gyrus	brain
5	chr13:53357400-53361400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr13:53357600-53359600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr13:53357600-53361400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr13:53358800-53359600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr13:53358800-53362000	Enhancers	Brain Cingulate Gyrus	brain
10	chr13:53359000-53359400	Weak transcription	Brain Substantia Nigra	brain
11	chr13:53359200-53361600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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