Variant report

Variant	rs2358060
Chromosome Location	chr6:121271686-121271687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11961576	0.91[EUR][1000 genomes]
rs11966429	0.91[EUR][1000 genomes]
rs17083056	0.88[EUR][1000 genomes]
rs55693456	0.88[EUR][1000 genomes]
rs6924822	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6931175	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6936134	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7747541	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7754235	0.91[EUR][1000 genomes]
rs7758651	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7759675	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7759684	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7770082	0.90[EUR][1000 genomes]
rs908462	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9401352	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv886591	chr6:121260089-121398535	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886592	chr6:121260089-121425387	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv464037	chr6:121261915-121400981	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604571	chr6:121261915-121400981	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121271400-121272400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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