Variant report

Variant	rs2358592
Chromosome Location	chr12:4159965-4159966
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10492325	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10735028	0.92[ASN][1000 genomes]
rs11829980	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11830453	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11832512	0.92[ASN][1000 genomes]
rs11833630	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11836187	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17699732	0.87[EUR][1000 genomes]
rs17699749	0.87[EUR][1000 genomes]
rs17836511	0.81[EUR][1000 genomes]
rs2532534	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2724198	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2724209	0.97[EUR][1000 genomes]
rs4766210	0.92[ASN][1000 genomes]
rs57223688	0.89[ASN][1000 genomes]
rs723152	0.92[ASN][1000 genomes]
rs7315461	0.95[EUR][1000 genomes]
rs759308	0.92[ASN][1000 genomes]
rs7955831	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530520	chr12:3726841-4601757	Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv832316	chr12:3981184-4180381	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2761723	chr12:4096815-4161871	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv468982	chr12:4108513-4164815	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv557120	chr12:4108513-4164815	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4142800-4164200	Weak transcription	Pancreas	Pancrea
2	chr12:4153200-4161600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:4155800-4160800	Weak transcription	Fetal Thymus	thymus
4	chr12:4157000-4169000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr12:4157800-4160800	Weak transcription	Brain Germinal Matrix	brain
6	chr12:4159200-4160000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:4159200-4161400	Weak transcription	Placenta	Placenta
8	chr12:4159600-4160600	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links