Variant report

Variant	rs236041
Chromosome Location	chr5:111781180-111781181
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10056378	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10068536	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs173889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs194279	0.81[AMR][1000 genomes]
rs255717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs255720	0.81[AMR][1000 genomes]
rs373362	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs375309	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs413652	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs451904	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55858222	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56212971	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56219213	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56281497	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56359113	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72781651	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72781662	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72781672	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72781674	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72781684	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72781686	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015302	chr5:111339022-111802947	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv537861	chr5:111339022-111802947	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv882714	chr5:111655382-111807579	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111780800-111784000	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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