Variant report

Variant	rs2361232
Chromosome Location	chr10:22099526-22099527
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12358471	1.00[TSI][hapmap]
rs73592601	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	esv1793816	chr10:22088054-22285371	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22048000-22109000	Weak transcription	Ovary	ovary
2	chr10:22048800-22114000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:22066000-22113000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:22074200-22105200	Weak transcription	Lung	lung
5	chr10:22074800-22100800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:22074800-22123200	Weak transcription	Left Ventricle	heart
7	chr10:22085600-22102800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:22086800-22102000	Weak transcription	Pancreas	Pancrea
9	chr10:22087000-22102000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:22087400-22102800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:22087400-22103000	Weak transcription	Primary B cells from cord blood	blood
12	chr10:22087800-22102400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr10:22087800-22110600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:22088400-22102600	Weak transcription	Liver	Liver
15	chr10:22091400-22110000	Weak transcription	Right Ventricle	heart
16	chr10:22091600-22102400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:22092600-22100000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr10:22093000-22100200	Weak transcription	GM12878-XiMat	blood
19	chr10:22094800-22103800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:22095000-22104400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:22095000-22114200	Weak transcription	Fetal Lung	lung
22	chr10:22096400-22100200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:22096400-22105600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr10:22096600-22099600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:22096600-22101400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:22096600-22101800	Weak transcription	Fetal Brain Female	brain
27	chr10:22096600-22102600	Weak transcription	Fetal Heart	heart
28	chr10:22096600-22104600	Weak transcription	Primary T cells from cord blood	blood
29	chr10:22096600-22105000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:22097000-22102800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr10:22097600-22103000	Weak transcription	Brain Angular Gyrus	brain
32	chr10:22097800-22099600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:22097800-22099800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr10:22097800-22099800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr10:22097800-22099800	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr10:22097800-22102200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:22097800-22102600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr10:22097800-22105200	Weak transcription	Esophagus	oesophagus
39	chr10:22098200-22099600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr10:22098200-22106200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr10:22098800-22100000	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr10:22099000-22099600	Enhancers	HMEC	breast
43	chr10:22099000-22099800	Enhancers	K562	blood
44	chr10:22099000-22100600	Enhancers	NHEK	skin
45	chr10:22099000-22100800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:22099200-22099800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr10:22099200-22099800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:22099200-22100200	Enhancers	HSMMtube	muscle
49	chr10:22099200-22100400	Enhancers	HSMM	muscle
50	chr10:22099400-22100200	Enhancers	HUES64 Cell Line	embryonic stem cell

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