Variant report

Variant	rs2361394
Chromosome Location	chr5:35800547-35800548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16902660	1.00[LWK][hapmap];0.87[MKK][hapmap]
rs16902661	1.00[LWK][hapmap];0.87[MKK][hapmap]
rs2229232	1.00[MKK][hapmap]
rs4869444	1.00[LWK][hapmap]
rs4869569	1.00[CHB][hapmap]
rs73090245	0.84[ASN][1000 genomes]
rs9292602	1.00[CHB][hapmap]
rs968833	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35785000-35803200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:35795200-35802600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:35797400-35803200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr5:35797600-35802800	Weak transcription	Fetal Brain Male	brain
5	chr5:35797600-35803000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr5:35797600-35803000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr5:35797800-35802800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr5:35797800-35804200	Weak transcription	Pancreas	Pancrea
9	chr5:35798000-35802200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:35798000-35803000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr5:35798200-35802400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr5:35798200-35802400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr5:35798200-35802800	Weak transcription	Dnd41	blood
14	chr5:35798600-35801400	Weak transcription	Fetal Thymus	thymus
15	chr5:35798600-35802200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr5:35798600-35802400	Weak transcription	Thymus	Thymus
17	chr5:35798600-35802800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:35798600-35803000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:35799000-35802000	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr5:35799200-35802600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr5:35799400-35801800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr5:35799400-35801800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr5:35799400-35802200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr5:35799600-35801000	Weak transcription	Primary T cells from cord blood	blood
25	chr5:35799600-35802200	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr5:35800200-35802400	Weak transcription	HSMMtube	muscle
27	chr5:35800200-35803000	Weak transcription	Fetal Muscle Leg	muscle
28	chr5:35800400-35802800	Weak transcription	Osteobl	bone
29	chr5:35800400-35803000	Weak transcription	NHDF-Ad	bronchial
30	chr5:35800400-35803200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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