Variant report

Variant	rs236360
Chromosome Location	chr6:36798868-36798869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36795450..36797184-chr6:36798475..36800268,2	MCF-7	breast:
2	chr6:36798286..36801016-chr6:36828535..36830113,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs236361	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36788400-36802400	Weak transcription	Fetal Kidney	kidney
2	chr6:36789800-36802200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:36790600-36799400	Enhancers	Fetal Muscle Leg	muscle
4	chr6:36791200-36805800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:36795200-36802600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:36795800-36801800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:36795800-36802200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:36796400-36802200	Weak transcription	Placenta	Placenta
9	chr6:36797000-36800000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:36798200-36799000	Enhancers	Fetal Heart	heart
11	chr6:36798200-36802600	Weak transcription	Brain Substantia Nigra	brain
12	chr6:36798600-36800000	Weak transcription	Fetal Intestine Small	intestine
13	chr6:36798600-36800200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr6:36798600-36802200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:36798600-36802400	Weak transcription	Brain Angular Gyrus	brain
16	chr6:36798600-36802400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:36798600-36802400	Weak transcription	Fetal Brain Male	brain
18	chr6:36798600-36802800	Weak transcription	Left Ventricle	heart
19	chr6:36798600-36805400	Weak transcription	Right Ventricle	heart
20	chr6:36798600-36805400	Weak transcription	HUVEC	blood vessel
21	chr6:36798600-36806800	Weak transcription	Ovary	ovary
22	chr6:36798800-36800400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:36798800-36802200	Weak transcription	Fetal Brain Female	brain
24	chr6:36798800-36802200	Weak transcription	Fetal Stomach	stomach
25	chr6:36798800-36802400	Weak transcription	Brain Germinal Matrix	brain
26	chr6:36798800-36802400	Enhancers	HepG2	liver
27	chr6:36798800-36802800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr6:36798800-36804000	Weak transcription	Brain Anterior Caudate	brain
29	chr6:36798800-36805600	Weak transcription	Right Atrium	heart

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