Variant report

Variant	rs236364
Chromosome Location	chr6:36795363-36795364
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36794334..36796730-chr6:36804291..36808430,4	K562	blood:
2	chr6:36735205..36738039-chr6:36795328..36797807,2	K562	blood:
3	chr6:36785208..36787449-chr6:36793356..36796337,2	K562	blood:
4	chr6:36794960..36797017-chr6:36818260..36820420,2	MCF-7	breast:
5	chr6:36795234..36797828-chr6:36799282..36801814,2	MCF-7	breast:
6	chr6:36789119..36791202-chr6:36794316..36796954,2	MCF-7	breast:
7	chr6:36794979..36796750-chr6:36806807..36808819,2	K562	blood:
8	chr6:36777747..36780393-chr6:36794218..36796370,2	K562	blood:
9	chr6:36561261..36563534-chr6:36794146..36796265,2	K562	blood:
10	chr6:36794469..36796279-chr6:36812712..36815459,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000124772	Chromatin interaction
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs236361	0.94[YRI][hapmap]
rs236363	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs236367	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs236371	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs236375	0.85[CEU][hapmap];0.85[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs236376	0.86[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs236388	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5261	chr6:36754545-36798824	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36777000-36797800	Weak transcription	Pancreas	Pancrea
2	chr6:36779400-36797600	Weak transcription	Fetal Brain Female	brain
3	chr6:36787400-36796400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:36788400-36802400	Weak transcription	Fetal Kidney	kidney
5	chr6:36788800-36797200	Enhancers	Right Atrium	heart
6	chr6:36789200-36796400	Enhancers	Left Ventricle	heart
7	chr6:36789400-36796000	Enhancers	K562	blood
8	chr6:36789800-36802200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:36790600-36799400	Enhancers	Fetal Muscle Leg	muscle
10	chr6:36790800-36795600	Enhancers	Esophagus	oesophagus
11	chr6:36791200-36805800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:36791400-36796000	Enhancers	Spleen	Spleen
13	chr6:36791400-36798000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:36791600-36797000	Enhancers	Right Ventricle	heart
15	chr6:36792000-36796200	Enhancers	Fetal Heart	heart
16	chr6:36792400-36796600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr6:36792800-36796000	Enhancers	Fetal Brain Male	brain
18	chr6:36793000-36796000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:36793400-36796600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:36793600-36796600	Enhancers	Adipose Nuclei	Adipose
21	chr6:36793800-36796200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr6:36793800-36796600	Enhancers	Brain Anterior Caudate	brain
23	chr6:36794000-36795400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:36794000-36795600	Enhancers	Lung	lung
25	chr6:36794000-36795800	Enhancers	Brain Angular Gyrus	brain
26	chr6:36794000-36796000	Enhancers	Brain Germinal Matrix	brain
27	chr6:36794000-36796400	Enhancers	Placenta	Placenta
28	chr6:36794000-36797200	Weak transcription	Fetal Intestine Small	intestine
29	chr6:36794200-36796000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:36794200-36796000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:36794200-36796400	Enhancers	Brain Cingulate Gyrus	brain
32	chr6:36794200-36796400	Enhancers	Brain Hippocampus Middle	brain
33	chr6:36794200-36796800	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr6:36794400-36795400	Enhancers	Brain Substantia Nigra	brain
35	chr6:36794400-36795600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
36	chr6:36794400-36795800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:36794400-36796000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:36794400-36796000	Enhancers	HMEC	breast
39	chr6:36794400-36796200	Enhancers	NH-A	brain
40	chr6:36794400-36796800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:36794600-36795600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:36794600-36795800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:36794600-36796400	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr6:36794600-36796600	Enhancers	Primary hematopoietic stem cells	blood
45	chr6:36794800-36795600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:36794800-36795800	Enhancers	HSMM	muscle
47	chr6:36794800-36795800	Enhancers	NHEK	skin
48	chr6:36794800-36796000	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr6:36794800-36796000	Enhancers	Muscle Satellite Cultured Cells	--
50	chr6:36794800-36796000	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links