Variant report

Variant	rs236382
Chromosome Location	chr6:36787662-36787663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36787597..36789136-chr6:36828345..36830659,2	K562	blood:
2	chr6:36773345..36779007-chr6:36781700..36788311,6	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10456445	0.85[CEU][hapmap]
rs12111266	0.81[CEU][hapmap]
rs12524422	0.86[CEU][hapmap]
rs12525540	0.86[CEU][hapmap]
rs12529199	0.86[CEU][hapmap]
rs17374068	0.85[CEU][hapmap]
rs236395	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs236397	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs236401	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs236404	0.93[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4348312	0.85[CEU][hapmap]
rs4714013	0.86[CEU][hapmap]
rs7745555	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5261	chr6:36754545-36798824	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36762600-36789600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:36774200-36788600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:36777000-36797800	Weak transcription	Pancreas	Pancrea
4	chr6:36779000-36788000	Weak transcription	HUVEC	blood vessel
5	chr6:36779000-36789200	Weak transcription	Left Ventricle	heart
6	chr6:36779000-36789400	Weak transcription	Fetal Stomach	stomach
7	chr6:36779000-36794000	Weak transcription	Brain Germinal Matrix	brain
8	chr6:36779200-36789400	Weak transcription	Right Ventricle	heart
9	chr6:36779400-36797600	Weak transcription	Fetal Brain Female	brain
10	chr6:36781400-36789000	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:36781600-36794200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:36784400-36788400	Weak transcription	HMEC	breast
13	chr6:36785400-36788000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:36785600-36788400	Enhancers	Fetal Kidney	kidney
15	chr6:36786000-36789400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:36786000-36790800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:36786200-36787800	Weak transcription	K562	blood
18	chr6:36786200-36788800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:36786200-36788800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:36786200-36788800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:36786200-36789000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:36786200-36789200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:36786200-36789200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:36787000-36791200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:36787200-36788000	Strong transcription	Brain Anterior Caudate	brain
26	chr6:36787400-36788000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:36787400-36788200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:36787400-36788200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr6:36787400-36796400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:36787600-36788000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr6:36787600-36788000	Strong transcription	Fetal Muscle Trunk	muscle
32	chr6:36787600-36788200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:36787600-36788200	Flanking Active TSS	HepG2	liver
34	chr6:36787600-36788600	Weak transcription	Fetal Muscle Leg	muscle
35	chr6:36787600-36789400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:36787600-36790600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links