Variant report

Variant	rs236406
Chromosome Location	chr6:36768619-36768620
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36765342..36766901-chr6:36767823..36770309,2	K562	blood:
2	chr6:36762637..36765531-chr6:36766725..36768709,2	MCF-7	breast:
3	chr6:36767816..36770525-chr6:36771116..36773895,3	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs236365	1.00[AMR][1000 genomes]
rs236366	1.00[AMR][1000 genomes]
rs236368	1.00[AMR][1000 genomes]
rs236369	1.00[AMR][1000 genomes]
rs236370	1.00[AMR][1000 genomes]
rs236397	0.86[YRI][hapmap]
rs236401	0.86[YRI][hapmap]
rs236405	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5261	chr6:36754545-36798824	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv991181	chr6:36757252-36768835	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36762000-36772200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:36762000-36772800	Weak transcription	Fetal Brain Female	brain
3	chr6:36762400-36772200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:36762600-36771000	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:36762600-36773000	Weak transcription	Right Ventricle	heart
6	chr6:36762600-36789600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:36762800-36772600	Weak transcription	Brain Anterior Caudate	brain
8	chr6:36762800-36772600	Weak transcription	HUVEC	blood vessel
9	chr6:36763200-36769000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:36763600-36771600	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:36764400-36773000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:36765000-36768800	Strong transcription	Fetal Stomach	stomach
13	chr6:36767800-36773000	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:36768000-36768800	Enhancers	Pancreas	Pancrea
15	chr6:36768000-36769400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr6:36768200-36769000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:36768200-36769000	Enhancers	Fetal Intestine Small	intestine
18	chr6:36768200-36769200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:36768400-36768800	Enhancers	Right Atrium	heart
20	chr6:36768600-36768800	Enhancers	Fetal Heart	heart
21	chr6:36768600-36769000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:36768600-36769000	Enhancers	HepG2	liver
23	chr6:36768600-36769400	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr6:36768600-36769400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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