Variant report

Variant	rs236412
Chromosome Location	chr6:36754019-36754020
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36753279..36755251-chr6:36760593..36763475,2	MCF-7	breast:
2	chr6:36752311..36754452-chr6:36830186..36832199,2	K562	blood:
3	chr6:36742530..36744850-chr6:36751901..36754075,2	K562	blood:
4	chr6:36746496..36750721-chr6:36752225..36755570,6	K562	blood:
5	chr6:36752024..36754549-chr6:36841699..36843856,2	MCF-7	breast:
6	chr6:36746005..36749095-chr6:36753090..36757403,5	K562	blood:

Variant related genes	Relation type
ENSG00000137168	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs236410	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36746000-36756600	Weak transcription	Fetal Brain Male	brain
2	chr6:36746600-36756400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:36747000-36755800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:36747200-36756200	Weak transcription	Brain Anterior Caudate	brain
5	chr6:36748600-36756200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:36748600-36756400	Weak transcription	Fetal Kidney	kidney
7	chr6:36749600-36756800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:36749800-36756200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:36752600-36768400	Weak transcription	Right Atrium	heart
10	chr6:36752800-36754800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:36753000-36754600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:36753000-36756200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:36753200-36754400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr6:36753400-36754400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr6:36753800-36754400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:36754000-36754200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:36754000-36754200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:36754000-36754200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr6:36754000-36754200	Enhancers	Brain Angular Gyrus	brain
20	chr6:36754000-36754200	Enhancers	Osteobl	bone
21	chr6:36754000-36754400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:36754000-36754400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:36754000-36754400	Enhancers	K562	blood

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