Variant report

Variant	rs236423
Chromosome Location	chr6:36743134-36743135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36737147..36740325-chr6:36742690..36745905,3	MCF-7	breast:
2	chr6:36741234..36745111-chr6:36747251..36750668,4	MCF-7	breast:
3	chr6:36741347..36744307-chr6:36980977..36983523,2	K562	blood:
4	chr6:36735765..36740410-chr6:36741274..36745029,7	K562	blood:
5	chr6:36742530..36744850-chr6:36751901..36754075,2	K562	blood:
6	chr6:36742135..36744958-chr6:36819478..36821110,2	K562	blood:

Variant related genes	Relation type
ENSG00000146192	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17623221	1.00[ASN][1000 genomes]
rs236424	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs236431	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs236434	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs236435	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs236437	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs405130	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv524053	chr6:36695223-36747406	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36722800-36748200	Weak transcription	Fetal Kidney	kidney
2	chr6:36734400-36744800	Weak transcription	Fetal Intestine Small	intestine
3	chr6:36737800-36744400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:36737800-36744800	Weak transcription	Brain Germinal Matrix	brain
5	chr6:36738000-36745000	Weak transcription	Brain Angular Gyrus	brain
6	chr6:36738000-36745200	Weak transcription	Fetal Lung	lung
7	chr6:36738000-36746000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:36738200-36751400	Weak transcription	Fetal Heart	heart
9	chr6:36738400-36752200	Weak transcription	Right Atrium	heart
10	chr6:36738600-36743200	Strong transcription	Fetal Stomach	stomach
11	chr6:36738600-36746000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:36738600-36746800	Weak transcription	Right Ventricle	heart
13	chr6:36740400-36744400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:36740400-36744400	Weak transcription	Brain Anterior Caudate	brain
15	chr6:36740400-36744800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:36740400-36744800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:36740400-36745000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:36740400-36745600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr6:36740400-36751200	Enhancers	Dnd41	blood
20	chr6:36740600-36743200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:36740600-36744200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:36740600-36746000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:36740600-36748800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:36741200-36743200	Enhancers	Fetal Brain Male	brain
25	chr6:36741400-36745200	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr6:36742200-36744400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:36742400-36743200	Enhancers	Fetal Muscle Leg	muscle
28	chr6:36742400-36745400	Weak transcription	Fetal Brain Female	brain
29	chr6:36743000-36743200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

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