Variant report

Variant	rs2364409
Chromosome Location	chr1:155974197-155974198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155902774..155905937-chr1:155970220..155974829,6	K562	blood:
2	chr1:155950118..155953012-chr1:155973513..155975361,2	K562	blood:
3	chr1:155972459..155975057-chr1:155976597..155981157,4	MCF-7	breast:
4	chr1:155973245..155975433-chr1:156026948..156029277,2	MCF-7	breast:
5	chr1:155970847..155975108-chr1:155988635..155992129,4	MCF-7	breast:
6	chr1:155912056..155914225-chr1:155973245..155974818,2	MCF-7	breast:
7	chr1:155959078..155960932-chr1:155973199..155976085,2	K562	blood:

Variant related genes	Relation type
ENSG00000116584	Chromatin interaction
ENSG00000132680	Chromatin interaction
ENSG00000163479	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2886070	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155959200-155978200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:155959400-155976600	Weak transcription	Aorta	Aorta
3	chr1:155959800-155974600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:155961200-155974600	Weak transcription	Lung	lung
5	chr1:155966200-155976600	Weak transcription	Brain Substantia Nigra	brain
6	chr1:155966200-155976800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:155966400-155978200	Weak transcription	Left Ventricle	heart
8	chr1:155966400-155978400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:155967000-155976600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:155967000-155976600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr1:155967000-155978400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:155970600-155975000	Enhancers	HMEC	breast
13	chr1:155970800-155978200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:155971000-155974600	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr1:155971400-155978600	Weak transcription	Brain Angular Gyrus	brain
16	chr1:155971400-155978600	Weak transcription	NHDF-Ad	bronchial
17	chr1:155971600-155978400	Weak transcription	Ovary	ovary
18	chr1:155971600-155978400	Weak transcription	Right Ventricle	heart
19	chr1:155971600-155978600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr1:155971800-155974800	Weak transcription	Brain Anterior Caudate	brain
21	chr1:155971800-155976600	Weak transcription	Placenta	Placenta
22	chr1:155971800-155976600	Weak transcription	Pancreas	Pancrea
23	chr1:155971800-155976800	Weak transcription	Brain Hippocampus Middle	brain
24	chr1:155971800-155978400	Weak transcription	Osteobl	bone
25	chr1:155971800-155978600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr1:155972000-155974600	Weak transcription	Fetal Heart	heart
27	chr1:155972000-155976600	Weak transcription	Liver	Liver
28	chr1:155972000-155976600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr1:155972000-155978600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr1:155972200-155974600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr1:155972200-155976600	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr1:155972200-155976600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr1:155972200-155976800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr1:155972400-155974600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr1:155972400-155974600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr1:155972400-155974800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr1:155972400-155976800	Weak transcription	Adipose Nuclei	Adipose
38	chr1:155972400-155978400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr1:155972400-155978400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr1:155972400-155978400	Weak transcription	Fetal Kidney	kidney
41	chr1:155972400-155978600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr1:155972600-155975200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr1:155972600-155976200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr1:155972600-155976600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr1:155972800-155974600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr1:155972800-155976600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr1:155972800-155978400	Weak transcription	HSMMtube	muscle
48	chr1:155973400-155974600	Enhancers	Primary T cells fromperipheralblood	blood
49	chr1:155973400-155975200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr1:155973400-155976600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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