Variant report

Variant	rs236461
Chromosome Location	chr6:36699347-36699348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36575587..36577672-chr6:36699166..36700977,3	MCF-7	breast:
2	chr6:36699118..36702234-chr6:36702324..36705046,3	K562	blood:
3	chr6:36693621..36695483-chr6:36698291..36701067,2	MCF-7	breast:
4	chr6:36561612..36564233-chr6:36698669..36701218,2	MCF-7	breast:
5	chr6:36692637..36694151-chr6:36698641..36700541,2	MCF-7	breast:
6	chr6:36689656..36693910-chr6:36696758..36700115,6	K562	blood:

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction
ENSG00000220349	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs236449	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs236450	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs236453	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs236457	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs236459	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs236460	0.93[ASN][1000 genomes]
rs87152	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv885809	chr6:36687518-36719079	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv885810	chr6:36695223-36714491	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv885811	chr6:36695223-36719079	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	nsv524053	chr6:36695223-36747406	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
10	nsv885812	chr6:36696904-36705684	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	esv3335005	chr6:36698846-36699416	Weak transcription Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36688400-36702200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:36689200-36702400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:36690400-36702600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:36694000-36703000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:36695800-36702600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:36695800-36702800	Weak transcription	Gastric	stomach
7	chr6:36696000-36702600	Weak transcription	NHEK	skin
8	chr6:36696600-36702200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr6:36696800-36699400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:36696800-36700200	Weak transcription	Fetal Brain Male	brain
11	chr6:36696800-36702200	Weak transcription	Lung	lung
12	chr6:36696800-36702200	Weak transcription	Spleen	Spleen
13	chr6:36696800-36702200	Weak transcription	NHLF	lung
14	chr6:36697000-36702200	Weak transcription	Primary B cells from cord blood	blood
15	chr6:36697200-36702400	Weak transcription	Adipose Nuclei	Adipose
16	chr6:36697200-36702400	Weak transcription	NHDF-Ad	bronchial
17	chr6:36697400-36702600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:36697600-36700200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr6:36697600-36701400	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr6:36697600-36701400	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr6:36697600-36702600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:36697600-36702600	Weak transcription	HUVEC	blood vessel
23	chr6:36697800-36702400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:36698000-36701400	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr6:36698200-36699400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr6:36698200-36699800	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr6:36698200-36699800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:36698800-36699400	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr6:36698800-36699600	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr6:36698800-36699600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:36698800-36700000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:36699000-36699600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr6:36699000-36702200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:36699200-36702200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:36699200-36703200	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr6:36699200-36703400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links