Variant report

Variant	rs2364713
Chromosome Location	chr2:178052986-178052987
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:178051306..178053456-chr2:178118294..178119937,2	K562	blood:
2	chr2:178051324..178053434-chr2:178075913..178078278,2	MCF-7	breast:
3	chr2:178052514..178055539-chr2:178058131..178060774,3	K562	blood:
4	chr2:178033789..178037099-chr2:178052758..178054602,3	MCF-7	breast:
5	chr2:178052688..178055383-chr2:178073014..178074530,2	K562	blood:
6	chr2:178051563..178055539-chr2:178058131..178061164,3	K562	blood:
7	chr2:178042450..178044110-chr2:178052920..178055654,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229337	Chromatin interaction
ENSG00000263721	Chromatin interaction
ENSG00000201102	Chromatin interaction
ENSG00000170144	Chromatin interaction

rs_ID	r²[population]
rs13403948	1.00[EUR][1000 genomes]
rs2706152	1.00[EUR][1000 genomes]
rs7575294	1.00[AMR][1000 genomes]

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178051800-178053800	Enhancers	Fetal Intestine Large	intestine
2	chr2:178051800-178053800	Enhancers	Hela-S3	cervix
3	chr2:178052000-178053000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:178052000-178053800	Enhancers	Stomach Mucosa	stomach
5	chr2:178052200-178053000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:178052200-178053000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:178052200-178053000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:178052200-178053000	Enhancers	A549	lung
9	chr2:178052200-178053000	Enhancers	HSMMtube	muscle
10	chr2:178052200-178053000	Enhancers	NHLF	lung
11	chr2:178052200-178053000	Enhancers	Osteobl	bone
12	chr2:178052200-178053400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:178052200-178053400	Enhancers	Liver	Liver
14	chr2:178052200-178053600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr2:178052200-178053800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr2:178052200-178053800	Enhancers	Duodenum Mucosa	Duodenum
17	chr2:178052200-178054000	Enhancers	Fetal Intestine Small	intestine
18	chr2:178052200-178054000	Flanking Active TSS	HepG2	liver
19	chr2:178052400-178053000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr2:178052400-178053000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr2:178052400-178053000	Enhancers	NHDF-Ad	bronchial
22	chr2:178052400-178053400	Enhancers	Left Ventricle	heart
23	chr2:178052400-178053400	Enhancers	Right Ventricle	heart
24	chr2:178052400-178053600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr2:178052400-178053600	Enhancers	GM12878-XiMat	blood
26	chr2:178052400-178053800	Enhancers	K562	blood
27	chr2:178052600-178053000	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr2:178052600-178053000	Enhancers	Right Atrium	heart
29	chr2:178052600-178053600	Enhancers	Small Intestine	intestine
30	chr2:178052600-178054600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr2:178052800-178053000	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr2:178052800-178054000	Enhancers	Fetal Heart	heart
33	chr2:178052800-178066600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr2:178052800-178076800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links