Variant report

Variant	rs236476
Chromosome Location	chr6:36690707-36690708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36576949..36579630-chr6:36689690..36691532,2	K562	blood:
2	chr6:36649873..36651499-chr6:36688995..36691220,2	MCF-7	breast:
3	chr6:36689656..36693910-chr6:36696758..36700115,6	K562	blood:
4	chr6:36572355..36575290-chr6:36687914..36691256,3	K562	blood:
5	chr6:36655048..36657495-chr6:36690151..36694122,3	MCF-7	breast:
6	chr6:36684189..36687540-chr6:36688167..36692245,5	MCF-7	breast:
7	chr6:36590940..36591484-chr6:36690008..36690968,2	K562	blood:
8	chr6:36575353..36578968-chr6:36688808..36692284,3	MCF-7	breast:

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs129546	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs236473	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs236475	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs236477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs236480	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs236481	1.00[YRI][hapmap]
rs236483	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs236484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs236486	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv885809	chr6:36687518-36719079	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36661400-36696400	Weak transcription	Right Atrium	heart
2	chr6:36671800-36694000	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr6:36672200-36693600	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:36677000-36694000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:36683800-36695200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:36688200-36692400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:36688400-36692400	Weak transcription	Primary B cells from cord blood	blood
8	chr6:36688400-36702200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:36688600-36692400	Weak transcription	GM12878-XiMat	blood
10	chr6:36688800-36692000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:36689200-36702400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:36689600-36691000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:36689600-36691200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:36689800-36693600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:36689800-36696600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:36690000-36690800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:36690000-36691000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:36690000-36692600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:36690000-36692600	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:36690000-36693800	Weak transcription	Fetal Heart	heart
21	chr6:36690400-36691200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:36690400-36691200	Enhancers	HMEC	breast
23	chr6:36690400-36691200	Enhancers	NHEK	skin
24	chr6:36690400-36696400	Weak transcription	Spleen	Spleen
25	chr6:36690400-36702600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr6:36690600-36690800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:36690600-36695200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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