Variant report

Variant	rs236491
Chromosome Location	chr6:36683774-36683775
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36587328..36589112-chr6:36683598..36686485,2	MCF-7	breast:
2	chr6:36645391..36647920-chr6:36680659..36684331,3	MCF-7	breast:
3	chr6:36560048..36562524-chr6:36680718..36683853,3	K562	blood:
4	chr6:36644040..36648031-chr6:36680924..36685784,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124762	Chromatin interaction
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs9357223	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9380590	0.85[MEX][hapmap]
rs9470378	0.82[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv885808	chr6:36659932-36684518	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs236491	SLC26A8	cis	parietal	SCAN
rs236491	FLJ43093	cis	multi-tissue	Pritchard

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36661400-36696400	Weak transcription	Right Atrium	heart
2	chr6:36671800-36694000	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr6:36672200-36693600	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:36677000-36694000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:36680000-36684000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:36681400-36688800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:36682000-36686400	Strong transcription	Spleen	Spleen
8	chr6:36682000-36686800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:36682200-36686200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:36682400-36687000	Weak transcription	GM12878-XiMat	blood
11	chr6:36682800-36684400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:36683200-36683800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:36683200-36683800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:36683200-36686400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:36683400-36683800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr6:36683400-36683800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr6:36683400-36683800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:36683400-36684000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:36683400-36684600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr6:36683600-36684400	Weak transcription	Stomach Mucosa	stomach
21	chr6:36683600-36686400	Enhancers	Esophagus	oesophagus

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