Variant report

Variant	rs2365659
Chromosome Location	chr2:210348362-210348363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10490754	0.90[MKK][hapmap]
rs16842923	0.87[AFR][1000 genomes]
rs41526653	0.90[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834518	chr2:210204958-210372744	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210332800-210351200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:210338000-210357400	Weak transcription	Aorta	Aorta
3	chr2:210339200-210359800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:210339200-210360000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:210341800-210352600	Weak transcription	Brain Germinal Matrix	brain
6	chr2:210342000-210352800	Weak transcription	Left Ventricle	heart
7	chr2:210342000-210353600	Weak transcription	Fetal Brain Male	brain
8	chr2:210343800-210351000	Weak transcription	Fetal Brain Female	brain
9	chr2:210345200-210349200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:210345200-210355200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr2:210345400-210349600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr2:210346200-210348400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr2:210346400-210348800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:210346400-210349600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:210347000-210352000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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