Variant report

Variant	rs2366163
Chromosome Location	chr10:23647619-23647620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11013381	0.96[CEU][hapmap];0.86[CHD][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1325591	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap]
rs1408986	0.81[CHD][hapmap]
rs986151	0.81[CHD][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2366163	PRTFDC1	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23641800-23653600	Weak transcription	HMEC	breast
2	chr10:23644000-23648200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:23644400-23649000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:23647600-23650200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:23647600-23650600	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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