Variant report

Variant	rs236907
Chromosome Location	chr1:171644586-171644587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:171642979..171645264-chr1:171671539..171674041,2	MCF-7	breast:
2	chr1:171640488..171642353-chr1:171643288..171645992,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1045456	1.00[CEU][hapmap]
rs10489252	1.00[CEU][hapmap]
rs12091786	0.94[CEU][hapmap]
rs12565176	1.00[CEU][hapmap]
rs17596025	1.00[CEU][hapmap]
rs17596081	1.00[CEU][hapmap]
rs17649609	1.00[CEU][hapmap]
rs17650310	1.00[CEU][hapmap]
rs1801898	1.00[CEU][hapmap]
rs2181216	1.00[CEU][hapmap]
rs2223602	0.94[CEU][hapmap]
rs2232819	1.00[CEU][hapmap]
rs2232824	1.00[CEU][hapmap]
rs2232825	1.00[CEU][hapmap]
rs2294718	1.00[CEU][hapmap]
rs235866	1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs236894	1.00[CEU][hapmap]
rs236899	1.00[CEU][hapmap]
rs498380	0.83[AMR][1000 genomes]
rs6674364	1.00[CEU][hapmap]
rs6675708	1.00[CEU][hapmap]
rs6681322	0.94[CEU][hapmap]
rs7522582	0.94[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv12447	chr1:171556291-171726822	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv872544	chr1:171616822-171654968	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs236907	KIAA0859	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171643200-171645000	Enhancers	Rectal Smooth Muscle	rectum
2	chr1:171643400-171644600	Enhancers	Colon Smooth Muscle	Colon
3	chr1:171643600-171644600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:171643600-171644800	Enhancers	Liver	Liver
5	chr1:171643800-171644600	Enhancers	Adipose Nuclei	Adipose
6	chr1:171643800-171645400	Enhancers	Stomach Smooth Muscle	stomach
7	chr1:171644000-171644600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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