Variant report
| Variant | rs2369202 |
|---|---|
| Chromosome Location | chr2:184986065-184986066 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10931121 | 0.82[AMR][1000 genomes] |
| rs12470103 | 0.81[AMR][1000 genomes] |
| rs12471114 | 0.82[AMR][1000 genomes] |
| rs12471151 | 0.82[AMR][1000 genomes] |
| rs12473588 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12476732 | 0.82[AMR][1000 genomes] |
| rs13000012 | 0.81[AMR][1000 genomes] |
| rs13008457 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs13016522 | 0.82[AMR][1000 genomes] |
| rs13018219 | 0.82[AMR][1000 genomes] |
| rs13021358 | 0.82[AMR][1000 genomes] |
| rs1526198 | 0.82[AMR][1000 genomes] |
| rs1526211 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1526212 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs1534208 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs1534213 | 0.82[AMR][1000 genomes] |
| rs17582219 | 0.87[ASN][1000 genomes] |
| rs34311580 | 0.82[AMR][1000 genomes] |
| rs34762374 | 0.87[ASN][1000 genomes] |
| rs35555932 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs35618001 | 0.87[ASN][1000 genomes] |
| rs4589712 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs60317026 | 0.82[AMR][1000 genomes] |
| rs6751918 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv875487 | chr2:184737282-185186670 | Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv997475 | chr2:184828307-184993186 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv834482 | chr2:184939548-185066635 | Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv998904 | chr2:184955270-185318483 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1012174 | chr2:184956114-185316664 | Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv875488 | chr2:184975795-185091908 | Enhancers Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs2369202 | NUP35 | cis | parietal | SCAN |
| rs2369202 | FSIP2 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:184979200-184986800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
