Variant report

Variant	rs237066
Chromosome Location	chr5:16182914-16182915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:16182882-16182932	K562	blood:	n/a
2	chr5:16182882-16182932	HIPEpiC	eye:	n/a
3	chr5:16182882-16182932	SK-N-SH	brain:	n/a
4	chr5:16182882-16182932	GM12892	blood:	n/a
5	chr5:16182882-16182932	NT2-D1	testis:	n/a
6	chr5:16182882-16182932	ProgFib	skin:	n/a
7	chr5:16182882-16182932	HL-60	blood:	n/a
8	chr5:16182882-16182932	PrEC	prostate:	n/a
9	chr5:16182882-16182932	AG09309	skin:	n/a
10	chr5:16182882-16182932	AG04450	lung:	fetal
11	chr5:16182882-16182932	Caco-2	colon:	n/a
12	chr5:16182882-16182932	BE2_C	brain:	n/a
13	chr5:16182882-16182932	SKMC	muscle:	n/a
14	chr5:16182882-16182932	T-47D	breast:	n/a
15	chr5:16182882-16182932	A549	lung:	n/a
16	chr5:16182882-16182932	SAEC	small airway:	n/a
17	chr5:16182882-16182932	MCF-7	breast:	n/a
18	chr5:16182882-16182932	CMK	blood:	n/a
19	chr5:16182882-16182932	AG10803	skin:	n/a
20	chr5:16182882-16182932	HCM	heart:	n/a
21	chr5:16182882-16182932	LNCaP	prostate:	n/a
22	chr5:16182882-16182932	IMR90	lung:	fetal
23	chr5:16182882-16182932	HCF	heart:	n/a
24	chr5:16182882-16182932	HRPEpiC	eye:	n/a
25	chr5:16182882-16182932	NH-A	brain:	n/a
26	chr5:16182882-16182932	PFSK-1	brain:	n/a
27	chr5:16182882-16182932	HEEpiC	esophagus:	n/a
28	chr5:16182882-16182932	AG09319	gingival:	n/a
29	chr5:16182882-16182932	AG04449	skin:	fetal
30	chr5:16182882-16182932	AoSMC	blood vessel:	n/a
31	chr5:16182882-16182932	Hela-S3	cervix:	n/a
32	chr5:16182882-16182932	HMEC	breast:	n/a
33	chr5:16182882-16182932	GM12891	blood:	n/a
34	chr5:16182882-16182932	HEK293	kidney:	embryo
35	chr5:16182882-16182932	SK-N-SH_RA	brain:	n/a
36	chr5:16182882-16182932	RPTEC	kidney:	n/a
37	chr5:16182882-16182932	U87	brain:	n/a
38	chr5:16182882-16182932	HRE	kidney:	n/a
39	chr5:16182882-16182932	HCPEpiC	choroid plexus:	n/a
40	chr5:16182882-16182932	HNPCEpiC	eye:	n/a
41	chr5:16182882-16182932	NB4	blood:	n/a
42	chr5:16182882-16182932	Jurkat	blood:	n/a
43	chr5:16182882-16182932	HCT-116	colon:	n/a
44	chr5:16182882-16182932	Hepatocyte	liver:	n/a
45	chr5:16182882-16182932	H1-hESC	embryonic stem cell:	embryo
46	chr5:16182882-16182932	ovcar-3	ovarian:	n/a
47	chr5:16182882-16182932	MCF10A-Er-Src	breast:	n/a
48	chr5:16182882-16182932	HPAEpiC	pulmonary alveolar:	n/a
49	chr5:16182882-16182932	HepG2	liver:	n/a
50	chr5:16182882-16182932	NHBE	bronchial:	n/a

No data

Variant related genes	Relation type
MARCH11	CpG island

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs342549	0.81[EUR][1000 genomes]
rs342558	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830217	chr5:16004704-16225229	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16182200-16184600	Weak transcription	Fetal Heart	heart

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