Variant report

Variant	rs2371632
Chromosome Location	chr12:57294983-57294984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1353781	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040850	chr12:57055011-57679209	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
2	nsv899107	chr12:57293436-57321212	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57291000-57295600	Enhancers	HMEC	breast
2	chr12:57291200-57295800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:57291800-57296800	Enhancers	K562	blood
4	chr12:57293600-57295200	ZNF genes & repeats	Lung	lung
5	chr12:57293600-57295200	ZNF genes & repeats	NHEK	skin
6	chr12:57293600-57295600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:57293800-57295000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr12:57293800-57295400	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr12:57294000-57295000	Enhancers	A549	lung
10	chr12:57294200-57295000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
11	chr12:57294800-57295000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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