Variant report

Variant	rs2372423
Chromosome Location	chr14:83922517-83922518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10498561	0.98[EUR][1000 genomes]
rs17118600	0.90[EUR][1000 genomes]
rs17118618	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17118624	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17118631	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17118632	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17118685	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17118691	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17118712	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17118719	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17118722	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17693428	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17693512	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs184531	0.92[EUR][1000 genomes]
rs2046435	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs229808	0.92[EUR][1000 genomes]
rs229809	0.92[EUR][1000 genomes]
rs229817	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59585175	0.95[EUR][1000 genomes]
rs61982662	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61982663	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61982666	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61984865	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61984866	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61984867	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61984908	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61984909	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61984911	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61984912	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61984913	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61984914	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61984915	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61984916	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61984917	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61984918	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61984921	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7152220	0.90[EUR][1000 genomes]
rs7157337	0.90[EUR][1000 genomes]
rs8012021	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8019486	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8021074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046869	chr14:83749048-84284813	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv542152	chr14:83749048-84284813	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv902154	chr14:83792205-84023013	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1039276	chr14:83814378-84232588	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1051153	chr14:83839382-84099803	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv542153	chr14:83839382-84099803	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1054143	chr14:83856849-83944217	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv527905	chr14:83856947-83944320	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv1048281	chr14:83860663-83944217	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv565372	chr14:83871553-83969918	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv1042429	chr14:83874053-83930146	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv832843	chr14:83891733-84038073	ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:83917200-83926800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:83922000-83922800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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