Variant report

Variant	rs2372502
Chromosome Location	chr3:80655763-80655764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:80654997..80655872-chr3:80725776..80726345,3	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1013409	0.80[ASN][1000 genomes]
rs10511111	0.90[ASN][1000 genomes]
rs11127705	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11127706	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11127707	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11715019	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12631230	0.84[EUR][1000 genomes]
rs13077623	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13100370	0.82[EUR][1000 genomes]
rs17391539	0.82[AFR][1000 genomes]
rs17469810	0.81[EUR][1000 genomes]
rs2372451	0.82[AFR][1000 genomes]
rs33938207	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34267339	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34283181	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34340252	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34370299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34390769	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34681735	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35261677	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs35267048	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35326234	0.85[EUR][1000 genomes]
rs35766760	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35937069	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4321489	0.82[AFR][1000 genomes]
rs58145326	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59888335	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61623958	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6548724	0.82[EUR][1000 genomes]
rs6548725	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs66767701	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs66826901	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66902125	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs67507470	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs67610769	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7621529	0.82[AFR][1000 genomes]
rs966617	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs966618	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014658	chr3:80035786-80716259	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv536599	chr3:80035786-80716259	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997720	chr3:80035786-80745662	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1004115	chr3:80349665-81043308	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv536601	chr3:80349665-81043308	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1067580	chr3:80416729-81043307	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv492220	chr3:80416729-81043307	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv1000592	chr3:80422155-81044175	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv527598	chr3:80585455-81250663	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	nsv877037	chr3:80611818-80811252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:80655400-80656400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr3:80655400-80656600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:80655600-80656400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:80655600-80656600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:80655600-80656800	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links