Variant report

Variant	rs2373177
Chromosome Location	chr7:147414399-147414400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1101045	0.86[YRI][hapmap]
rs1404734	0.92[EUR][1000 genomes]
rs1525255	0.93[EUR][1000 genomes]
rs1638048	0.81[ASW][hapmap];0.96[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap]
rs6464836	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7786758	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs851721	0.96[CEU][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2373177	SMARCD3	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147414200-147419000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:147414200-147419400	Weak transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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