Variant report

Variant	rs2374402
Chromosome Location	chr12:104960778-104960779
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11112100	0.84[AFR][1000 genomes]
rs2036834	0.80[AFR][1000 genomes]
rs61940019	0.81[AFR][1000 genomes]
rs61940020	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832504	chr12:104853331-105028245	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1035364	chr12:104948307-105003705	Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104947800-104961200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr12:104947800-104964400	Weak transcription	Aorta	Aorta
3	chr12:104949000-104961400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr12:104949600-104968800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:104949800-104963400	Weak transcription	Lung	lung
6	chr12:104950000-104978800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:104951600-104962200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr12:104955200-104961800	Weak transcription	Spleen	Spleen
9	chr12:104955600-104962000	Weak transcription	Gastric	stomach
10	chr12:104957200-104962400	Genic enhancers	Dnd41	blood
11	chr12:104958400-104961600	Weak transcription	Thymus	Thymus
12	chr12:104958400-104961800	Weak transcription	Primary T cells from cord blood	blood
13	chr12:104958400-104961800	Weak transcription	Fetal Brain Female	brain
14	chr12:104958400-104962200	Weak transcription	K562	blood
15	chr12:104958400-104969000	Weak transcription	A549	lung
16	chr12:104958400-104972400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr12:104958600-104961200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr12:104958600-104962000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr12:104958800-104960800	Weak transcription	Primary B cells from cord blood	blood
20	chr12:104958800-104962800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr12:104959200-104963800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr12:104959400-104960800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr12:104959400-104960800	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr12:104959400-104961400	Enhancers	Primary B cells from peripheral blood	blood
25	chr12:104959400-104962200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr12:104959400-104962400	Enhancers	GM12878-XiMat	blood
27	chr12:104959400-104964000	Enhancers	Primary hematopoietic stem cells	blood
28	chr12:104959400-104965400	Enhancers	Primary T cells fromperipheralblood	blood
29	chr12:104959400-104965600	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr12:104959600-104960800	Enhancers	Brain Anterior Caudate	brain
31	chr12:104959600-104961800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr12:104959600-104963200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr12:104959800-104960800	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr12:104959800-104961000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr12:104959800-104961800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr12:104959800-104962000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr12:104959800-104962000	Weak transcription	Pancreas	Pancrea
38	chr12:104960000-104961400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr12:104960000-104961600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr12:104960000-104963200	Weak transcription	Adipose Nuclei	Adipose
41	chr12:104960000-104963200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr12:104960000-104964000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr12:104960000-104964600	Weak transcription	Left Ventricle	heart
44	chr12:104960200-104961200	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr12:104960200-104961600	Weak transcription	Fetal Brain Male	brain
46	chr12:104960400-104961200	Weak transcription	Fetal Thymus	thymus
47	chr12:104960400-104961600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr12:104960400-104962000	Weak transcription	Rectal Smooth Muscle	rectum
49	chr12:104960400-104962600	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr12:104960400-104963200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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