Variant report

Variant	rs2374528
Chromosome Location	chr12:106052338-106052339
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10778426	0.80[EUR][1000 genomes]
rs10861474	0.80[EUR][1000 genomes]
rs10861475	0.80[EUR][1000 genomes]
rs11112661	0.83[EUR][1000 genomes]
rs11112676	0.81[EUR][1000 genomes]
rs11112677	0.81[EUR][1000 genomes]
rs2374527	0.86[EUR][1000 genomes]
rs2374549	0.86[EUR][1000 genomes]
rs4964155	0.87[EUR][1000 genomes]
rs61940939	0.80[EUR][1000 genomes]
rs7133279	0.80[EUR][1000 genomes]
rs7299119	0.87[EUR][1000 genomes]
rs7308992	0.81[EUR][1000 genomes]
rs7310198	0.80[EUR][1000 genomes]
rs9634226	0.81[EUR][1000 genomes]
rs9804780	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039068	chr12:105935786-106211250	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv899503	chr12:106021477-106175903	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv560054	chr12:106048142-106083042	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106045800-106052400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:106051600-106052400	Enhancers	Aorta	Aorta
3	chr12:106051600-106055200	Enhancers	Right Atrium	heart
4	chr12:106051600-106055400	Enhancers	Fetal Muscle Leg	muscle
5	chr12:106051800-106053000	Enhancers	HUVEC	blood vessel
6	chr12:106051800-106053800	Enhancers	Adipose Nuclei	Adipose
7	chr12:106052200-106053400	Weak transcription	Right Ventricle	heart
8	chr12:106052200-106055000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr12:106052200-106055200	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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