Variant report

Variant	rs2378657
Chromosome Location	chr9:85873983-85873984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10867970	1.00[CHB][hapmap]
rs12115310	1.00[CHB][hapmap]
rs7027526	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs9942867	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv6586	chr9:85869828-85914812	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85854800-85890400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:85855000-85881400	Weak transcription	Adipose Nuclei	Adipose
3	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:85866200-85913000	Weak transcription	Aorta	Aorta
5	chr9:85872400-85875200	Weak transcription	Right Atrium	heart
6	chr9:85873000-85874000	Enhancers	Fetal Heart	heart
7	chr9:85873000-85874000	Enhancers	Left Ventricle	heart
8	chr9:85873000-85874000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr9:85873000-85875400	Enhancers	Psoas Muscle	Psoas
10	chr9:85873200-85874200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr9:85873600-85874000	Enhancers	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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