Variant report

Variant	rs2380201
Chromosome Location	chr10:5894650-5894651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5872995..5874657-chr10:5893099..5894735,2	K562	blood:
2	chr10:5854377..5856986-chr10:5893024..5895477,2	MCF-7	breast:
3	chr10:5874179..5876350-chr10:5894206..5896113,2	K562	blood:
4	chr10:5887234..5889271-chr10:5891738..5894895,3	K562	blood:
5	chr10:5835385..5837024-chr10:5893151..5895747,2	MCF-7	breast:
6	chr10:5886207..5890565-chr10:5893992..5897304,3	K562	blood:

Variant related genes	Relation type
ENSG00000057608	Chromatin interaction
ENSG00000272764	Chromatin interaction

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10795590	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10795591	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10795593	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10795595	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10795596	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10905299	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10905302	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10905303	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10905307	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10905316	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11255527	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11255548	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11255549	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11255555	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11255558	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11255564	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11255577	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11255581	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11524382	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11819695	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12250878	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12253826	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12255077	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12359234	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12769593	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12774966	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12777477	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12779398	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12780246	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12784539	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2104285	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2137423	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2203196	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2203197	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2380200	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2380205	0.92[EUR][1000 genomes]
rs2380208	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3954757	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4009521	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4256891	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4282894	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4282898	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4287254	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4293038	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4301704	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4330991	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4421659	0.88[EUR][1000 genomes]
rs4428973	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4468244	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4497300	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6602283	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6602284	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7072174	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7073128	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7098372	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7099029	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs713588	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7894083	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7894559	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7897260	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7898042	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7898059	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7901964	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7902205	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7903875	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7906635	0.83[EUR][1000 genomes]
rs7907795	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7907914	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7908028	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7919044	0.88[EUR][1000 genomes]
rs7923278	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs867052	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs867053	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs907685	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs907686	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs907688	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs907689	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs907690	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9663697	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9663995	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9732607	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv5654	chr10:5868365-5930634	Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv3342274	chr10:5875995-5901345	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv1801910	chr10:5881740-5898882	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv825229	chr10:5886905-5967697	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	esv3516966	chr10:5888343-5894728	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv1807017	chr10:5890688-5898882	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv466722	chr10:5893268-5916201	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv549904	chr10:5893268-5916201	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5883200-5897000	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:5888800-5904400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:5889200-5900400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:5889400-5902000	Weak transcription	Placenta	Placenta
5	chr10:5890200-5896600	Enhancers	Primary B cells from cord blood	blood
6	chr10:5893600-5896400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr10:5893600-5896400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:5893800-5896000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:5894600-5894800	Active TSS	HepG2	liver
10	chr10:5894600-5894800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr10:5894600-5895600	Enhancers	GM12878-XiMat	blood
12	chr10:5894600-5908600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:5894600-5908600	Weak transcription	K562	blood
14	chr10:5894600-5916800	Weak transcription	Spleen	Spleen

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