Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10495586	0.95[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10495587	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12467999	0.85[EUR][1000 genomes]
rs12472261	0.95[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12476424	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12478104	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12478956	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12479075	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13026386	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13027180	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2119144	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34587335	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35573038	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35763905	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35875804	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35921314	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35971524	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4129333	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55752546	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55804172	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56057816	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56159518	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56278051	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs727458	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7584364	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv999704	chr2:12153766-12243960	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1005069	chr2:12161023-12242734	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1000696	chr2:12162843-12241022	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12177800-12183400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr2:12178000-12183600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr2:12178000-12183800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr2:12181400-12185000	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr2:12181600-12193200	Enhancers	Primary B cells from peripheral blood	blood
6	chr2:12182000-12184600	Enhancers	Primary B cells from cord blood	blood
7	chr2:12182200-12185000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr2:12182400-12184800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr2:12182600-12189200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr2:12182600-12189400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr2:12182800-12183200	Enhancers	Primary T cells fromperipheralblood	blood
12	chr2:12182800-12183400	Weak transcription	GM12878-XiMat	blood
13	chr2:12182800-12183600	Weak transcription	Primary T cells from cord blood	blood
14	chr2:12182800-12184000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr2:12183000-12184400	Enhancers	Monocytes-CD14+_RO01746	blood

Quick Search: