Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69424228..69426143-chr8:69430126..69432077,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11986509	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs16934676	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs16934677	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs2380469	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs2380470	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs4474010	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs6472400	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs6981803	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs6982414	0.89[CHB][hapmap]
rs6986697	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs6986715	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs7812638	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs7821486	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs7821720	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs7822229	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs7822332	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs7822643	0.90[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap]
rs7823068	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs7826853	0.88[ASW][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.88[MKK][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7838651	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs7838662	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs7840898	0.90[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1023810	chr8:69308665-69440129	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539644	chr8:69308665-69440129	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv890981	chr8:69413110-69534542	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv890982	chr8:69420911-69468914	Bivalent/Poised TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69423800-69445600	Weak transcription	Aorta	Aorta
2	chr8:69431600-69431800	Weak transcription	Fetal Brain Male	brain

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