Variant report

Variant	rs2381687
Chromosome Location	chr2:145832258-145832259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:145831836..145834513-chr2:145842893..145844887,2	K562	blood:
2	chr2:145831278..145834150-chr2:145834537..145836320,2	K562	blood:
3	chr2:145831278..145833894-chr2:145834820..145837755,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARHGAP15-6	chr2:145830091-145834291	NONHSAT074787
2	lnc-ARHGAP15-6	chr2:145830091-145834296	ENSG00000226674

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10192407	0.82[EUR][1000 genomes]
rs10496972	0.82[ASN][1000 genomes]
rs10928240	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1106909	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12618061	0.82[ASN][1000 genomes]
rs12618916	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12691705	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12990539	0.82[ASN][1000 genomes]
rs13028626	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13408842	0.93[EUR][1000 genomes]
rs1830319	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1830321	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1852684	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1852685	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2252641	0.83[EUR][1000 genomes]
rs2381686	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28709970	0.92[EUR][1000 genomes]
rs4662414	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6725803	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7561039	0.82[ASN][1000 genomes]
rs7593336	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs787428	0.90[EUR][1000 genomes]
rs787429	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv932113	chr2:145515124-145844491	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv431768	chr2:145741527-145981491	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv875262	chr2:145830053-145888369	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv875263	chr2:145830053-145892427	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv875264	chr2:145830053-145911634	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145827800-145833200	Weak transcription	A549	lung
2	chr2:145828600-145833400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:145830400-145863200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links