Variant report

Variant	rs2382398
Chromosome Location	chr9:13528855-13528856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10961102	0.84[EUR][1000 genomes]
rs10961103	0.84[EUR][1000 genomes]
rs1333988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1543712	0.82[EUR][1000 genomes]
rs1543713	0.81[EUR][1000 genomes]
rs4741308	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7864569	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7870726	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs933034	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs933035	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892585	chr9:13508282-13621142	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv466259	chr9:13510394-13593125	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv613619	chr9:13510394-13593125	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13520600-13529200	Weak transcription	NHEK	skin
2	chr9:13522600-13529600	Weak transcription	HUVEC	blood vessel
3	chr9:13524600-13529400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:13526800-13529600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr9:13527800-13532200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:13528600-13529000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:13528800-13536000	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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