Variant report

Variant	rs2384437
Chromosome Location	chr10:56047755-56047756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10763098	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825296	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10825316	0.81[CEU][hapmap]
rs12358060	0.85[CHB][hapmap]
rs12358062	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1342280	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1418367	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2384442	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2891514	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7092253	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7098778	0.89[JPT][hapmap]
rs7350458	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7915662	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7917641	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs857369	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs857376	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs920526	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9416306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1053832	chr10:56022197-56061600	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv6698	chr10:56030123-56074572	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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