Variant report

Variant	rs2384520
Chromosome Location	chr10:56441751-56441752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10825390	1.00[CHB][hapmap]
rs11004439	0.91[CEU][hapmap];0.92[GIH][hapmap];0.95[MEX][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11004441	0.81[MEX][hapmap]
rs11004446	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11004462	1.00[CHB][hapmap]
rs11004463	1.00[CHB][hapmap]
rs11004464	1.00[CHB][hapmap]
rs11004465	1.00[CHB][hapmap]
rs11004466	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs11004470	0.84[CHB][hapmap]
rs11004473	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs11004474	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs11004480	0.86[CHB][hapmap]
rs11004490	1.00[CHB][hapmap]
rs11004491	0.84[CHB][hapmap]
rs11004515	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs11004526	1.00[CHB][hapmap]
rs11004528	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs11004529	1.00[CHB][hapmap]
rs11004530	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs11004531	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs11004532	1.00[CHB][hapmap]
rs11004535	1.00[CHB][hapmap]
rs11004556	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs11004574	1.00[CHB][hapmap]
rs12217615	1.00[CHB][hapmap]
rs12220692	1.00[CHB][hapmap]
rs12220919	1.00[CHB][hapmap]
rs12220935	1.00[CHB][hapmap]
rs1414690	1.00[CHB][hapmap]
rs16906482	1.00[CHB][hapmap]
rs17500464	1.00[JPT][hapmap]
rs1932602	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs2384526	1.00[CHB][hapmap]
rs4935119	1.00[CHB][hapmap]
rs4935535	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs4935540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4935542	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4935543	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.88[TSI][hapmap];0.88[YRI][hapmap]
rs4935545	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs4935554	1.00[CHB][hapmap]
rs4935556	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs4935557	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs56269938	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7081239	1.00[CHB][hapmap]
rs7086634	1.00[CHB][hapmap]
rs7086650	1.00[CHB][hapmap]
rs7087693	1.00[CHB][hapmap]
rs7902184	0.82[MEX][hapmap]
rs7905280	0.85[CHB][hapmap]
rs953128	1.00[CHB][hapmap];0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050405	chr10:56224676-56800009	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv540635	chr10:56224676-56800009	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv933410	chr10:56319433-56713977	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1043144	chr10:56332903-56680265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1045621	chr10:56353504-56468425	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv550970	chr10:56361499-56764751	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
7	esv2758221	chr10:56408027-56566137	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2759754	chr10:56408027-56566137	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv895447	chr10:56428277-56587755	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv2757387	chr10:56436508-56473754	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv1809742	chr10:56441343-56474113	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv550973	chr10:56441751-56469288	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56441400-56442800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:56441600-56441800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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