Variant report

Variant	rs2385117
Chromosome Location	chr8:49863619-49863620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10097264	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10100077	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10808734	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11515036	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1441004	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1441005	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1992375	0.85[CEU][hapmap];0.86[JPT][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2203065	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2385120	0.81[EUR][1000 genomes]
rs2582778	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2385117	SNTG1	cis	cerebellum	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49859800-49865000	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr8:49860000-49864800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr8:49860200-49864400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr8:49860200-49864400	Enhancers	Thymus	Thymus
5	chr8:49860200-49864800	Enhancers	Dnd41	blood
6	chr8:49860200-49865000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr8:49860200-49866000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr8:49860400-49864400	Enhancers	Primary T cells fromperipheralblood	blood
9	chr8:49860400-49864400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr8:49860400-49864800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr8:49860400-49865200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr8:49860600-49864800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr8:49860600-49864800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr8:49860800-49864400	Enhancers	Primary B cells from peripheral blood	blood
15	chr8:49860800-49864400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr8:49861000-49863800	Enhancers	Fetal Thymus	thymus
17	chr8:49861000-49865400	Weak transcription	Gastric	stomach
18	chr8:49861800-49864600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr8:49862000-49863800	Enhancers	Primary hematopoietic stem cells	blood
20	chr8:49862000-49864000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr8:49862600-49864600	Enhancers	Primary T cells from cord blood	blood
22	chr8:49862800-49864600	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr8:49862800-49865000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr8:49863400-49863800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr8:49863400-49863800	Enhancers	Spleen	Spleen
26	chr8:49863400-49864200	Enhancers	GM12878-XiMat	blood
27	chr8:49863600-49865400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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