Variant report

Variant	rs2387145
Chromosome Location	chr1:10650509-10650510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:10645687..10648071-chr1:10649314..10651327,2	MCF-7	breast:
2	chr1:10647759..10650609-chr1:10651674..10653313,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10779745	0.83[AMR][1000 genomes]
rs10864467	0.87[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs190774	1.00[MEX][hapmap]
rs2387144	0.81[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[AMR][1000 genomes]
rs284239	1.00[MEX][hapmap]
rs284246	1.00[MEX][hapmap]
rs4846238	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817370	chr1:10305470-10697150	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1008021	chr1:10363794-10802633	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1009596	chr1:10626249-10652605	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10589400-10664800	Weak transcription	Aorta	Aorta
2	chr1:10603000-10659000	Weak transcription	Primary B cells from cord blood	blood
3	chr1:10605000-10659000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr1:10628400-10661600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr1:10628800-10651200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr1:10629800-10659000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:10631800-10659200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr1:10632600-10698000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr1:10635800-10650800	Weak transcription	HSMMtube	muscle
10	chr1:10636000-10650600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:10636200-10655600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:10636200-10656000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:10636400-10656200	Weak transcription	NHEK	skin
14	chr1:10636600-10658000	Weak transcription	Spleen	Spleen
15	chr1:10637400-10652200	Weak transcription	Fetal Intestine Small	intestine
16	chr1:10637400-10659000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:10638400-10657400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr1:10638400-10661600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:10638600-10651600	Weak transcription	Left Ventricle	heart
20	chr1:10638600-10661600	Weak transcription	Primary B cells from peripheral blood	blood
21	chr1:10639000-10651200	Weak transcription	HSMM	muscle
22	chr1:10639000-10652800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr1:10639200-10650600	Weak transcription	A549	lung
24	chr1:10639800-10659200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr1:10640400-10656600	Weak transcription	Placenta	Placenta
26	chr1:10643200-10656200	Weak transcription	Primary T cells from cord blood	blood
27	chr1:10644200-10683400	Weak transcription	K562	blood
28	chr1:10646000-10650600	Weak transcription	HepG2	liver
29	chr1:10646000-10654400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr1:10647400-10654400	Weak transcription	Lung	lung
31	chr1:10648200-10656200	Weak transcription	Gastric	stomach
32	chr1:10649000-10654400	Weak transcription	Ovary	ovary
33	chr1:10649000-10655600	Weak transcription	Fetal Intestine Large	intestine
34	chr1:10649400-10657800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr1:10650000-10652000	Enhancers	Liver	Liver
36	chr1:10650000-10659200	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr1:10650200-10652400	Enhancers	GM12878-XiMat	blood
38	chr1:10650200-10653600	Enhancers	Fetal Lung	lung
39	chr1:10650200-10670600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr1:10650400-10651400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr1:10650400-10654400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links