Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr13:30601036-30601248	HepG2	liver:	n/a	n/a
2	MXI1	chr13:30599591-30601296	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000266505	TF binding region

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17504075	1.00[CHB][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17631642	1.00[CEU][hapmap]
rs17688104	1.00[CEU][hapmap]
rs2388378	0.92[ASN][1000 genomes]
rs4769782	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3410550	chr13:30598652-30602150	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30593200-30606600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr13:30595200-30612000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:30598600-30605000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:30599200-30602800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:30599200-30602800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr13:30599200-30602800	Enhancers	NHDF-Ad	bronchial
7	chr13:30599200-30602800	Enhancers	Osteobl	bone
8	chr13:30599400-30602600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr13:30599800-30611600	Weak transcription	Fetal Brain Male	brain
10	chr13:30600400-30602600	Enhancers	HepG2	liver
11	chr13:30600600-30601800	Enhancers	Fetal Intestine Small	intestine
12	chr13:30600600-30602000	Enhancers	Fetal Intestine Large	intestine
13	chr13:30600800-30601800	Weak transcription	NH-A	brain
14	chr13:30600800-30602000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr13:30600800-30602000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr13:30600800-30607000	Weak transcription	NHLF	lung
17	chr13:30600800-30607200	Weak transcription	HSMM	muscle
18	chr13:30600800-30607200	Weak transcription	HSMMtube	muscle
19	chr13:30601000-30602000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr13:30601200-30601600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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