Variant report

Variant	rs2389578
Chromosome Location	chr7:16066289-16066290
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10242664	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1528145	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17355113	0.83[EUR][1000 genomes]
rs1918854	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2389577	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6950895	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7459076	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785394	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv517991	chr7:16042596-16104327	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1030165	chr7:16043678-16085488	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv518740	chr7:16045794-16085019	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv527277	chr7:16045794-16085019	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv606311	chr7:16045794-16085019	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16061200-16068800	Enhancers	Rectal Smooth Muscle	rectum
2	chr7:16062400-16066800	Weak transcription	Adipose Nuclei	Adipose
3	chr7:16064200-16068600	Enhancers	Colon Smooth Muscle	Colon
4	chr7:16064600-16066800	Enhancers	Fetal Heart	heart
5	chr7:16064600-16069000	Enhancers	HSMMtube	muscle
6	chr7:16064600-16069200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:16065000-16067600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:16065000-16068600	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr7:16065200-16067400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr7:16065200-16068400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr7:16065200-16068800	Enhancers	Osteobl	bone
12	chr7:16065200-16069000	Enhancers	NHLF	lung
13	chr7:16065200-16069200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:16065400-16066400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr7:16065400-16066600	Enhancers	Psoas Muscle	Psoas
16	chr7:16065400-16068600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr7:16065400-16068600	Enhancers	NH-A	brain
18	chr7:16065400-16068800	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr7:16065400-16069400	Enhancers	NHDF-Ad	bronchial
20	chr7:16065400-16069600	Enhancers	Fetal Lung	lung
21	chr7:16065600-16067400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:16065800-16066600	Enhancers	HSMM	muscle
23	chr7:16065800-16068400	Enhancers	HUVEC	blood vessel
24	chr7:16066000-16066400	Enhancers	Stomach Smooth Muscle	stomach
25	chr7:16066000-16066600	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr7:16066000-16066600	Enhancers	Fetal Stomach	stomach
27	chr7:16066000-16067400	Enhancers	Aorta	Aorta
28	chr7:16066000-16067400	Enhancers	Fetal Muscle Leg	muscle
29	chr7:16066000-16068600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:16066000-16068600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr7:16066200-16066600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr7:16066200-16066600	Enhancers	Left Ventricle	heart
33	chr7:16066200-16066800	Enhancers	Right Atrium	heart

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