Variant report

Variant	rs239020
Chromosome Location	chr21:17700700-17700701
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs239021	1.00[ASN][1000 genomes]
rs239023	1.00[ASN][1000 genomes]
rs239025	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs239072	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834051	chr21:17564843-17721764	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
3	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17689400-17700800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr21:17691000-17701000	Weak transcription	Brain Anterior Caudate	brain
3	chr21:17692000-17703000	Weak transcription	Ovary	ovary
4	chr21:17694400-17701000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr21:17694400-17701800	Weak transcription	Hela-S3	cervix
6	chr21:17696800-17702600	Weak transcription	Osteobl	bone
7	chr21:17697600-17701000	Weak transcription	Brain Substantia Nigra	brain
8	chr21:17697600-17702600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr21:17697600-17703000	Weak transcription	Fetal Brain Female	brain
10	chr21:17697800-17702600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr21:17700400-17701800	Enhancers	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links