Variant report

Variant	rs2390589
Chromosome Location	chr4:124746875-124746876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10030323	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10518307	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11098723	0.84[EUR][1000 genomes]
rs11945657	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12511921	0.81[EUR][1000 genomes]
rs1347187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368507	0.83[EUR][1000 genomes]
rs16997770	0.89[CEU][hapmap];0.87[CHB][hapmap]
rs1820372	0.83[CEU][hapmap];0.87[CHB][hapmap];0.81[GIH][hapmap]
rs1865127	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1897621	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1986305	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2060286	0.81[EUR][1000 genomes]
rs4833953	0.82[EUR][1000 genomes]
rs4833956	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62321806	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62321807	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72621845	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72621846	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7683595	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs963892	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv2754745	chr4:124698055-124770865	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124735200-124753800	Weak transcription	Psoas Muscle	Psoas
2	chr4:124737600-124752200	Weak transcription	Gastric	stomach
3	chr4:124738400-124748000	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:124743200-124759800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr4:124743600-124751000	Weak transcription	Fetal Lung	lung
6	chr4:124743800-124752000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:124743800-124752600	Weak transcription	Right Atrium	heart
8	chr4:124744000-124752400	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:124744400-124747000	Enhancers	HepG2	liver
10	chr4:124745000-124749200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:124745200-124747000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr4:124745200-124747600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:124745400-124747600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:124745400-124748600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:124745800-124749000	Enhancers	NHLF	lung
16	chr4:124746000-124748600	Enhancers	Osteobl	bone
17	chr4:124746200-124747400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr4:124746400-124749000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:124746400-124749000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:124746400-124750600	Weak transcription	Fetal Intestine Large	intestine
21	chr4:124746600-124747600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:124746600-124748600	Enhancers	HMEC	breast
23	chr4:124746600-124749200	Enhancers	NHDF-Ad	bronchial
24	chr4:124746600-124750200	Weak transcription	Fetal Intestine Small	intestine
25	chr4:124746800-124747000	Enhancers	Aorta	Aorta
26	chr4:124746800-124747000	Enhancers	Left Ventricle	heart
27	chr4:124746800-124747000	Enhancers	HUVEC	blood vessel
28	chr4:124746800-124747400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr4:124746800-124747400	Enhancers	HSMM	muscle
30	chr4:124746800-124748200	Enhancers	Placenta Amnion	Placenta Amnion
31	chr4:124746800-124748600	Enhancers	NH-A	brain

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